Subio Platform is a highly sophisticated software. It's designed for biologists so that they can easily use it without mathematical or IT background.
Omics Data Browser and Repository:
Subio Platform is technology-independent, and you can import any type of microarray data (Affymetrix, Agilent, NimbleGen, etc.), tag-counts from deep sequencing (ChIP-seq, RNA-seq, CGH-seq etc.), and public data from NCBI GEO database. You can store thousands of samples in local PC, and quickly find by keywords. To assemble and reanalyze public data is a essential part of new life science study. It works well with R for advanced statistical analysis.
Data Sharing and Collaboration Tool:
After you analyze omics data with wide variety of biological information, export all data (e.g. gene annotations, sample information, experimental data, result of statistical analysis, PDFs and so on) into one archive (ssa) file. Your collaborators can completely reconstruct what you saw on their PCs just by drag-and-drop the ssa. Such an easy and rich communication tool is necessary for collaborations between biologists and informaticians.
- Learn more: http://www.screencast.com/t/OTM2MDE1YTg
- Customer site: Thermus thermophilus HB8 Whole Cell Project
Plug-in License Manager:
Plug-ins add analytical functions to Subio Platform. They're included in Subio Platform, but are not ready unless you exercise a Serial Number to activate them on your PC. Users can reasonably buy what they really need instead of expensive full package. You don't need to be afraid of license expiration so much, because you can see all saved data on Subio Platform anytime. You only cannot run new analysis without a valid license.
For Informaticians:
Subio Platform is a software infrastructure to mediate you and biologists. We provide a new alternative distribution channel for your tools. We collect license fee from end users and we take 1/3 of revenue to provide maintenance, aftercare and training. You get 2/3 (or you can give up) for improvement or new development. Because it's a NON-EXCLUSIVE contract, you can simultaneously distribute from anywhere like Bioconductor. This is the third way for who need more help than free software, but can't afford expensive software, services or hiring informaticians. We always welcome your offering. Contact Us.
Features:
- Line Graph
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- Drag on Line Graph to select genes, which are also selected in the annotation table below at a same time.
- Scatter Plot (Measurements)
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- Compare data distribution of two samples. You can easily assign samples to axes by drag & drop.
- Tree View
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- A tree view visualizes a result of hierarchical clustering. You can easily traverse nodes by navigation buttons.
- Scatter Plot (Samples)
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- Scatter Plot (Samples) visualizes a result of PCA. Colors of spots and arrows help your understanding.
- Venn Diagram
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- Drag & drop a Measurement List on circles, then click area of extracting genes.
- Genome View
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- You can visualize and search genomic location associated data like ChIP-chip/-seq, CGH and tiling array.
Learn more:
Technical Support:
You can select from three levels of support service.
- 1) Free.
- Find a solution on the User Forum, and post a question. Helpdesk Service within 30 min is also free.
- 2) 3,000JPY (about 30 USD) / hour.
- Helpdesk Service is available when you don't know how to analyze your data. Our experienced consultants help you.
- 3) 10,000JPY (about 100 USD) / hour.
- On-site consulting, on-site training, programming or other skillful services are also available as Professional Service.