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After you extract several groups of genes with statistical tools, Genpac Plug-in is useful to interpret them in biological context.
Genpac is a database of interactions among genes, compounds and diseases. With Genpac Plug-in, you can easily post a query of a gene (or a group of genes) from Subio Plaform, and then the Genpac website displays a table of interactions. You can sort and filter by any columns of the table. And the advanced filter provides you more filtering options like journal, published year and so on. It greatly reduces time for searching literature and collecting knowledge.
The Gene Ontology (GO) enrichment analysis tool is also included in Genpac Plug-in. There are many tools offering either of these functions, but combining both is more than two independent tools.
Genpac Plug-in supports following 11 organisms;
Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Bacillus subtilis, Escherichia coli.
For more information, please visit NalaPro Technologies site.
See What You Can Do with Genpac Plug-in:
Function List:
- Genpac Database Search
- From a gene or a group of genes which are extracted statistically.
- Interaction Table
- Sorting and filtering by each column.
- Advanced Filter
- Filtering by keywords, dictionary, journal and published year.
- Interaction Pathway
- Exporting a file which you can visualize with Cytoscape.
- GO Enrichment Analysis
- Displaying the enriched GO categories in a table or a tree structure.
Technical Support (Free):
Self-Support (Free):
Workflow with plug-ins:
