Genpac Interaction DB
ex.)MAPK1, Actin, Fluorouracil,
thrombocytopenia
Powered by Nalapro technologies
Hello Subio
Customer List
User Survey
Filtering by Language:
  • Japanese
  • English

Movie Tutorials

Data Import

Import Subio Series Archive (ssa) Files. [movie, English]
Ssa files contain all information to reconstruct all analysis results. It's the easiest way to share omics data within team or with partners.
Import Affymetrix 3' IVT Expression Data [movie, English]
Instruction of importing Affymetrix 3' IVT expression microarray data.
Import Affymetrix Whole-Transcript Expression Data [movie, English]
Instruction of importing Affymetrix whole-transcript expression microarray data.
Import NimbleGen Expression Data [movie, English]
Instruction of importing NimbleGen expression microarray data.
Import Agilent Expression Microarray Data [movie, English]
Instruction of importing Agilent expression microarray data.
Import Agilent 2 color (dye-swap) Microarray Data [movie, English]
Instruction of importing 2 color (dye-swap) microarray data.
Import Agilent CGH Array Data [movie, English]
Instruction of importing Agilent CGH array data.
Import ChIP-Seq Data [movie, English]
Instruction of importing ChIP-Seq data based on next generation sequencing technologies.
Import GEO Data [movie, English]
Instruction of importing oimcs data which are freely available from GEO database.

Visualizations

Line Graph [movie, English]
Drag on Line Graph to select genes, which are also selected in the annotation table below at a same time.
Scatter Plot (Measurements) [movie, English]
Compare data distribution of two samples. You can easily assign samples to axes by drag & drop.
Tree View [movie, English]
A tree view visualizes a result of hierarchical clustering. You can easily traverse nodes by navigation buttons.
Scatter Plot (Samples) [movie, English]
Scatter Plot (Samples) visualizes a result of PCA. Colors of spots and arrows help your understanding.
Genomve View [movie, English]
You can visualize and search genomic location associated data like ChIP-chip/-seq, CGH and tiling array.
Pathway View [movie, English]
Pathway View displays expression pattern on metabolic or signaling pathways. It helps biological interpretation.

Analysis

Venn Diagram (Subio Platform) [movie, English]
Drag & drop a Measurement List on circles, then click area of extracting genes.
Normalization (Basic Plug-in) [movie, English]
Coordinate blocks to define normalization. You can promptly recall a saved normalization scheme.
Filtering (Basic Plug-in) [movie, English]
You can filter out genes by flag or signal values to remove noise disturbing statistical analysis.
Find Similar Pattern (Basic Plug-in) [movie, English]
You can extract genes which are correlated or anti-correlated to a template pattern.
Differential Expression Analysis (Basic Plug-in) [movie, English]
You can extract DEG (Differentially Expressed Genes) by fold and/or p-value. P-values can be corrected by BH FDR.
ANOVA (Basic Plug-in) [movie, English]
You can extract genes which are differentially expressed among groups by ANOVA.
Clustering (Basic Plug-in) [movie, English]
Hierarchical clustering is useful to group genes and samples by gene expression profiles.
Principal Component Analysis (Basic Plug-in) [movie, English]
PCA is useful to summarize expression profile, especially for researching pathology and diagnosis.
Search Gene by Genpac Interaction DB (Genpac Plug-in) [movie, English]
You can search interactions from a gene or gene set. A result is in a simple table so that you can save as Excel sheet.
GO Enrichment Analysis (Genpac Plug-in) [movie, English]
Gene Ontology analysis is very popular to characterize a gene set, which is extracted by a statistical analysis.
Enrichment Analysis (Annotation Analysis Plug-in) [movie, English]
Enrichment analysis tool helps your interpretation of a gene list, which shows a specific expression pattern.
Pathway Edit Tool (Annotation Analysis Plug-in) [movie, English]
Pathway Edit Tool enables users creating and modifying graph elements on pathway image.
Genomic Location Filter (Genomic Analysis Plug-in) [movie, English]
You can extract genes of upstream, downstream or overlapping from genes, probes or sequence tags.
Analyze ChIP-seq data with expression data (Genomic Analysis Plug-in) [movie, English]
Genomic location filter mediates different types of omics data, like ChIP-seq and expression array data.
How to define web links (Subio Platform) [movie, English]
You can easily define web links by yourself, to get more information about genes.