Try Genome View_2; U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line

• By: tayac@subio
• Date: 2010-01-29 15:43:46
• Tags:
  • ssa
  • human

Sample GSM499400 of Series GSE19986 in GEO is now available to see on Subio Platform by importing ssa file from;
http://www.box.net/shared/21yd68by9f

Overall design of the Series
Whole genome sequencing of the U87MG brain cancer cell line using the AB SOLiD3 sequencer and genotyping using the Illumina Human1M-Duov3 DNA Analysis BeadChip

Contributor(s)
Nelson SF, Clark MJ

Sample GSM 499400 is sequence data summarized as BED format files. There are 4 files in this Sample;
GSM499400_UCLA-NL_U87MG_SNV_in_dbSNP.txt.gz 97.2 Mb
GSM499400_UCLA-NL_U87MG_SNV_not_dbSNP.txt.gz 10.1 Mb
GSM499400_UCLA-NL_U87MG_indels_in_dbSNP.txt.gz 3.4 Mb
GSM499400_UCLA-NL_U87MG_indels_not_dbSNP.txt.gz 4.7 Mb

I uploaded ssa file containing only 2 file of them, "indels in dbSNP" and "indels not dbSNP", easy to import and see for everybody. See Subio Platform read BED file directly and display them on Genome View. Genome View work if a Biological Table is loaded. Biological Table for human is available at
http://www.box.net/shared/gcv9xulp39
See from page 13 of this Document
http://www.subio.jp/share/getting_started.pdf
how to load a biological table.

You can easily import the .ssa file into Subio Platform and view it.
Subio Platform is a free omics data browser for biologists.
Windows and Mac versions are available.
https://www.subio.jp/products/download

Instruction movie for importing .ssa file
http://www.screencast.com/t/OTM2MDE1YTg

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